Journal: Nature
Article Title: Bidirectional histone monoaminylation dynamics regulate neural rhythmicity
doi: 10.1038/s41586-024-08371-3
Figure Lengend Snippet: a , LC-MS/MS quantification of H3K4 methylation states (H3K4me0 vs . H3K4me1 vs . H3K4me2; H3K4me3 signal was negligible and was thus omitted) on H3 (1-21) unmodified vs . H3Q5ser vs . H3Q5his peptides, titrating the concentration of MLL1 complex in the system. b – g , Enzymatic quantifications related to Fig. : LC-MS/MS quantification of H3K4 methylation states (H3K4me0 vs . H3K4me1 vs . H3K4me2 vs . H3K4me3) on H3 (1-21) unmodified vs . H3Q5his peptides for (b) MLL1, (c) MLL2, (d) MLL3, (e) MLL4, (f) SETD1A and (g) SETD1B complexes ( n = 3 per peptide/complex). Two-way ANOVA (main effects of interaction: MLL1 – p < 0.0001, F 3,16 = 105.5; MLL2 – p = 0.0002, F 3,16 = 12.29; MLL3 – p < 0.0001, F 3,16 = 86.82; MLL4 – p = 0.0003, F 3,16 = 11.26; SETD1A – p < 0.0001, F 3,16 = 18.86; SETD1B – p < 0.0001, F 3,16 = 41.49), Sidak’s MC tests; significant post hoc comparisons are noted [MLL1: ** p = 0.0017 (H3K4me0), **** p < 0.0001 (H3K4me1/2); MLL2: ** p = 0.0036 (H3K4me0), ** p = 0.0014 (H3K4me1); MLL3: **** p < 0.0001 (H3K4me0 and H3K4me1); MLL4: *** p = 0.0001 (H3K4me1); SETD1A: *** p = 0.0006 (H3K4me0), *** p = 0.0001 (H3K4me1); SETD1B: **** p < 0.0001 (H3K4me0/1)]. h , H3 (1-21) unmodified peptide IPs against recombinant core members of the MLL1 complex (ASH2L, RBBP5, DPY30, MLL1 SET and, WDR5) demonstrating that only WDR5 interacts with the unmodified H3 tail in monomeric form. i , H3 (1-21) unmodified vs . H3Q5his vs . H3Q5ser peptide IPs (Streptavidin) against the recombinant MLL1 complex, followed by western blotting for WDR5 ( n = 3 per peptide). Streptavidin was used to visualize the peptides post-IP, which were used for normalization. One-way ANOVA ( p = 0.0014, F 2,6 = 24.03), Tukey’s MC test: significant comparisons are noted (H3 unmodified vs . H3Q5ser, p = 0.0065; H3Q5his vs . H3Q5ser, p = 0.0013). # p = 0.0462 indicates a significant difference via an a posteriori unpaired Student’s t-test (t 4 = 2.854). Data presented as mean +/– SEM. A.U., arbitrary units, normalized to respective controls (e.g., H3 unmodified peptide). Supplementary Fig. = uncropped blots. Source data provided as a Source Data file .
Article Snippet: H3K4 methyltransferase assays were conducted, unless otherwise indicated, by combining 1.2 μM of either MLL1 (Active Motif, 31423), MLL2 (Active Motif, 31498), MLL3 (Active Motif, 31478), MLL4 (Active Motif, 31499), SETD1A (Active Motif, 81341) or SETD1B (Active Motif, 81342) complexes with 10 μM histone H3 peptide (unmodified versus H3Q5his; 1–21) and 100 μM S -adenosyl methionine in 50 mM Tris, pH 7.5, 50 mM KCl, 5 mM DTT, 5 mM MgCl 2 and 5% glycerol at 25 °C for 3 h. The reactions were quenched by the addition of HPLC solvent A (H 2 O + 0.1% TFA).
Techniques: Liquid Chromatography with Mass Spectroscopy, Methylation, Concentration Assay, Recombinant, Western Blot